Updated git source for the Manual based on the latex file provided by Andrea from Georgy's description about "Adjacent Edits in Timeline" that need adjusting if get an empty segment between. You can see the changes and the accompanying png descriptive file at:
or clone via:
In addition I updated a few URLs in title.tex, Introduction.tex, and Installation.tex in accordance with the updated website locations. There are more to do but I keep making a few other really minor changes too and I know that I have missed some in auxiliary files that I will need to fix.